Taxon Table | Genome Table
Genome Meta Information:
Lachnospiraceae [G2]
bacterium HMT-096
JCVI_32_bin.48 (GCA_015259645.1)
| HOMD Genome-ID |
GCA_015259645.1
|
| HOMD Taxon-ID |
HMT-0096
|
| Species Name (in use by HOMD) |
Lachnospiraceae [G2] bacterium HMT-096
|
| Organism Name (as deposited) |
HMT-096 Lachnospiraceae [G2] bacterium HMT-096 JCVI_32_bin.48
|
| Strain or Isolate |
JCVI_32_bin.48
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__F0428;
s__F0428 sp003043955 |
| Sequencing Technology |
Illumina NextSeq
|
| Genome Coverage |
2.76713
|
| Contigs |
Number of Contigs: 191
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
1,791,370 (bp) |
| GC Percentage |
39.97
|
| MAG |
yes
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/259/645/GCA_015259645.1_ASM1525964v1
|
| CDS |
1653
|
| Genes |
1695
|
| mRNA |
1695
|
| misc RNA |
13
|
| rRNA |
0
|
| tRNA |
28
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
%
|
| CheckM Completeness |
0 %
|
| CheckM Contamination |
0 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM1525964v1
|
| GenBank Assembly Accession |
GCA_015259645.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
[NCBI]
|
| BioSample |
SAMN14570802
[NCBI]
|
| BioProject |
PRJNA624185
[NCBI]
|
| Submitter |
J. Craig Venter Institute
|
| Submission Date |
2020-04-09T20:00:09.800
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
JABZPD01
|
| NCBI TaxID |
1898203
|
| Isolation Source |
saliva
|
| Geo Location |
USA: UCLA School of Dentistry
|
