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Genome Meta Information:
Rothia mucilaginosa JCVI_36_bin.5 (GCA_015259765.1)
| HOMD Genome-ID | GCA_015259765.1 |
| HOMD Taxon-ID | HMT-681 |
| Species Name (in use by HOMD) | Rothia mucilaginosa |
| Organism Name (as deposited) | HMT-681 Rothia mucilaginosa clade-681 JCVI_36_bin.5 |
| Strain or Isolate | JCVI_36_bin.5 |
| GTDB Taxonomy | d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;
s__Rothia mucilaginosa |
| Sequencing Technology | Illumina NextSeq |
| Genome Coverage | 8.4x |
| Contigs |
Number of Contigs: 155
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| Total Sequence Length | 2,207,952 (bp) |
| GC Percentage | 59.67 |
| MAG | yes |
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/259/765/GCA_015259765.1_ASM1525976v1 |
| CDS | 1709 |
| Genes | 1768 |
| mRNA | 1768 |
| misc RNA | 12 |
| rRNA | 2 |
| tRNA | 44 |
| tmRNA | 1 |
| CRISPR-cas |
No Available Data |
| Pangenomes (Beta) |
Rothia__mucilaginosa__HMT_147_681
Open SVG
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| Genome Assembly Name | ASM1525976v1 |
| GenBank Assembly Accession |
GCA_015259765.1
[NCBI]
[GTDB]
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| RefSeq Assembly Accession |
GCF_015259765.1
[NCBI]
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| BioSample |
SAMN14571035
[NCBI]
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| BioProject |
PRJNA624185
[NCBI]
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| Submitter | J. Craig Venter Institute |
| Submission Date | 2020-04-09T20:41:09.546 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | live |
| WGS Project | JABZXY01 |
| NCBI TaxID | 1885016 |
| Isolation Source | saliva |
| Geo Location | USA: UCLA School of Dentistry |
| ANI (Average Nucluotide Identity) | % |
| CheckM Completeness | 96.93 % |
| CheckM Percentile | 87.5 % |
| CheckM Contamination | 0.89 % |
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