Back To Genome Table
Genome Meta Information:
Rothia mucilaginosa JCVI_44_bin.2 (GCA_015259835.1)
| HOMD Genome-ID | GCA_015259835.1 |
| HOMD Taxon-ID | HMT-681 |
| Species Name (in use by HOMD) | Rothia mucilaginosa |
| Organism Name (as deposited) | HMT-681 Rothia mucilaginosa clade-681 JCVI_44_bin.2 |
| Strain or Isolate | JCVI_44_bin.2 |
| GTDB Taxonomy | d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;
s__Rothia mucilaginosa |
| Sequencing Technology | Illumina NextSeq |
| Genome Coverage | 16.5x |
| Contigs |
Number of Contigs: 113
|
[Open in Genome Viewer]
[Show Sequence]
[Linkout to NCBI]
|
|
| Total Sequence Length | 2,370,162 (bp) |
| GC Percentage | 59.83 |
| MAG | yes |
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/259/835/GCA_015259835.1_ASM1525983v1 |
| CDS | 1884 |
| Genes | 1960 |
| mRNA | 1960 |
| misc RNA | 16 |
| rRNA | 4 |
| tRNA | 55 |
| tmRNA | 1 |
| CRISPR-cas |
No Available Data |
| Pangenomes (Beta) | No Available Data |
|
| Genome Assembly Name | ASM1525983v1 |
| GenBank Assembly Accession |
GCA_015259835.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_015259835.1
[NCBI]
|
| BioSample |
SAMN14571028
[NCBI]
|
| BioProject |
PRJNA624185
[NCBI]
|
| Submitter | J. Craig Venter Institute |
| Submission Date | 2020-04-09T20:41:09.440 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | live |
| WGS Project | JABZXR01 |
| NCBI TaxID | 43675 |
| Isolation Source | saliva |
| Geo Location | USA: UCLA School of Dentistry |
| ANI (Average Nucluotide Identity) | 95.27 % |
| CheckM Completeness | 97.65 % |
| CheckM Percentile | 33.333332 % |
| CheckM Contamination | 2.98 % |
|
