Genome Meta Information: Bifidobacterium animalis TK-J6A (GCA_015377505.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_015377505.1 | ||
| HOMD Taxon-ID | HMT-0895 | ||
| Species Name (in use by HOMD) | Bifidobacterium animalis | ||
| Organism Name (as deposited) | HMT-895 Bifidobacterium animalis TK-J6A | ||
| Strain or Isolate | TK-J6A | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium; s__Bifidobacterium animalis |
||
| Sequencing Technology | Oxford Nanopore GridION; Illumina HiSeq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 1,944,283 (bp) | ||
| GC Percentage | 60.49 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/377/505/GCA_015377505.1_ASM1537750v1 | ||
| CDS | 1564 | ||
| Genes | 1639 | ||
| mRNA | 1639 | ||
| misc RNA | 9 | ||
| rRNA | 12 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 98.97 % | ||
| CheckM Contamination | 0.27 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1537750v1 |
| GenBank Assembly Accession | GCA_015377505.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_015377505.1 [NCBI] |
| BioSample | SAMN13106276 [NCBI] |
| BioProject | PRJNA579198 [NCBI] |
| Submitter | Zhejiang Tianke High Technology Development Co.Ltd. |
| Submission Date | 2019-10-23T22:06:04.400 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 28025 |
| Isolation Source | probitic products |
| Geo Location | China:Zhejiang province |
