Genome Meta Information: Lacticaseibacillus casei MGB0470 (GCA_015476095.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_015476095.1 | ||
| HOMD Taxon-ID | HMT-0568 | ||
| Species Name (in use by HOMD) | Lacticaseibacillus casei | ||
| Organism Name (as deposited) | HMT-568 Lacticaseibacillus casei MGB0470 | ||
| Strain or Isolate | MGB0470 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus; s__Lacticaseibacillus casei |
||
| Sequencing Technology | PacBio RS II | ||
| Genome Coverage | 122 | ||
| Contigs |
|
||
| Total Sequence Length | 2,940,907 (bp) | ||
| GC Percentage | 47.9 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/476/095/GCA_015476095.1_ASM1547609v1 | ||
| CDS | 2891 | ||
| Genes | 2995 | ||
| mRNA | 2995 | ||
| misc RNA | 29 | ||
| rRNA | 15 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 86.38 % | ||
| CheckM Contamination | 1.25 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1547609v1 |
| GenBank Assembly Accession | GCA_015476095.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_015476095.1 [NCBI] |
| BioSample | SAMN16657552 [NCBI] |
| BioProject | PRJNA674460 [NCBI] |
| Submitter | World Institute of Kimchi |
| Submission Date | 2020-11-04T03:15:27.590 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1582 |
| Isolation Source | kimchi |
| Geo Location | South Korea |
