Taxon Table | Genome Table
Genome Meta Information:
Streptococcus
pseudopneumoniae
A18006565 (GCA_015700135.1)
| HOMD Genome-ID |
GCA_015700135.1
|
| HOMD Taxon-ID |
HMT-0425
|
| Species Name (in use by HOMD) |
Streptococcus pseudopneumoniae
|
| Organism Name (as deposited) |
HMT-425 Streptococcus pseudopneumoniae A18006565
|
| Strain or Isolate |
A18006565
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;
s__Streptococcus pseudopneumoniae |
| Sequencing Technology |
Illumina NextSeq
|
| Genome Coverage |
111
|
| Contigs |
Number of Contigs: 149
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,183,820 (bp) |
| GC Percentage |
39.84
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/700/135/GCA_015700135.1_ASM1570013v1
|
| CDS |
2094
|
| Genes |
2203
|
| mRNA |
2203
|
| misc RNA |
65
|
| rRNA |
3
|
| tRNA |
40
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
97.26 %
|
| CheckM Completeness |
96.76 %
|
| CheckM Contamination |
2.9 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM1570013v1
|
| GenBank Assembly Accession |
GCA_015700135.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_015700135.1
[NCBI]
|
| BioSample |
SAMN15921667
[NCBI]
|
| BioProject |
PRJNA659631
[NCBI]
|
| Submitter |
Region Zealand
|
| Submission Date |
2020-08-27T06:34:13.837
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
JACSYT01
|
| NCBI TaxID |
257758
|
| Isolation Source |
Lower respiratory tract
|
| Geo Location |
Denmark:Slagelse
|
