Genome Meta Information: Streptococcus pneumoniae 563 (GCA_015840115.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_015840115.1 | ||
| HOMD Taxon-ID | HMT-0734 | ||
| Species Name (in use by HOMD) | Streptococcus pneumoniae | ||
| Organism Name (as deposited) | HMT-734 Streptococcus pneumoniae 563 | ||
| Strain or Isolate | 563 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus pneumoniae |
||
| Sequencing Technology | PacBio Sequel | ||
| Genome Coverage | 701 | ||
| Contigs |
|
||
| Total Sequence Length | 2,140,016 (bp) | ||
| GC Percentage | 39.51 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/840/115/GCA_015840115.1_ASM1584011v1 | ||
| CDS | 2090 | ||
| Genes | 2244 | ||
| mRNA | 2244 | ||
| misc RNA | 82 | ||
| rRNA | 12 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.84 % | ||
| CheckM Completeness | 99.47 % | ||
| CheckM Contamination | 0.52 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1584011v1 |
| GenBank Assembly Accession | GCA_015840115.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_015840115.1 [NCBI] |
| BioSample | SAMN13321475 [NCBI] |
| BioProject | PRJNA590750 [NCBI] |
| Submitter | American University of Beirut |
| Submission Date | 2019-11-18T13:52:04.340 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1313 |
| Isolation Source | blood |
| Geo Location | Lebanon: North |
