Genome Meta Information: Haemophilus parainfluenzae FDAARGOS_1000 (GCA_016127215.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_016127215.1 | ||
| HOMD Taxon-ID | HMT-0718 | ||
| Species Name (in use by HOMD) | Haemophilus parainfluenzae | ||
| Organism Name (as deposited) | HMT-718 Haemophilus parainfluenzae FDAARGOS_1000 | ||
| Strain or Isolate | FDAARGOS_1000 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D; s__Haemophilus_D parainfluenzae |
||
| Sequencing Technology | Pacbio; Illumina | ||
| Genome Coverage | 1737.59 | ||
| Contigs |
|
||
| Total Sequence Length | 2,141,704 (bp) | ||
| GC Percentage | 39.31 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/127/215/GCA_016127215.1_ASM1612721v1 | ||
| CDS | 1974 | ||
| Genes | 2106 | ||
| mRNA | 2106 | ||
| misc RNA | 55 | ||
| rRNA | 19 | ||
| tRNA | 57 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 99.42 % | ||
| CheckM Contamination | 0.48 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1612721v1 |
| GenBank Assembly Accession | GCA_016127215.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_016127215.1 [NCBI] |
| BioSample | SAMN16357169 [NCBI] |
| BioProject | PRJNA231221 [NCBI] |
| Submitter | US Food and Drug Administration |
| Submission Date | 2020-10-03T14:56:08.606 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 729 |
| Isolation Source | missing |
| Geo Location | Germany: Braunschweig |
