Genome Meta Information: Corynebacterium macginleyi 180216 (GCA_016628585.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_016628585.1 | ||
| HOMD Taxon-ID | HMT-0050 | ||
| Species Name (in use by HOMD) | Corynebacterium macginleyi | ||
| Organism Name (as deposited) | HMT-050 Corynebacterium macginleyi 180216 | ||
| Strain or Isolate | 180216 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium macginleyi |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 135 | ||
| Contigs |
|
||
| Total Sequence Length | 2,390,797 (bp) | ||
| GC Percentage | 57.15 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/628/585/GCA_016628585.1_ASM1662858v1 | ||
| CDS | 2319 | ||
| Genes | 2386 | ||
| mRNA | 2386 | ||
| misc RNA | 7 | ||
| rRNA | 6 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.89 % | ||
| CheckM Completeness | 99.9 % | ||
| CheckM Contamination | 0.82 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1662858v1 |
| GenBank Assembly Accession | GCA_016628585.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_016628585.1 [NCBI] |
| BioSample | SAMN13895342 [NCBI] |
| BioProject | PRJNA602417 [NCBI] |
| Submitter | Aarhus University |
| Submission Date | 2020-01-21T09:23:06.523 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAACCB01 |
| NCBI TaxID | 38290 |
| Isolation Source | cornea |
| Geo Location | Sweden: Orebro |
