Genome Meta Information: Corynebacterium macginleyi 180126 (GCA_016628615.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_016628615.2 | ||
| HOMD Taxon-ID | HMT-0050 | ||
| Species Name (in use by HOMD) | Corynebacterium macginleyi | ||
| Organism Name (as deposited) | HMT-050 Corynebacterium macginleyi 180126 | ||
| Strain or Isolate | 180126 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium macginleyi |
||
| Sequencing Technology | Oxford Nanopore MinION; Illumina MiSeq | ||
| Genome Coverage | 141 | ||
| Contigs |
|
||
| Total Sequence Length | 2,405,258 (bp) | ||
| GC Percentage | 57.08 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/628/615/GCA_016628615.2_ASM1662861v2 | ||
| CDS | 2318 | ||
| Genes | 2390 | ||
| mRNA | 2390 | ||
| misc RNA | 7 | ||
| rRNA | 12 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98 % | ||
| CheckM Completeness | 99.76 % | ||
| CheckM Contamination | 0.41 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1662861v2 |
| GenBank Assembly Accession | GCA_016628615.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_016628615.2 [NCBI] |
| BioSample | SAMN13895340 [NCBI] |
| BioProject | PRJNA602417 [NCBI] |
| Submitter | Aarhus University |
| Submission Date | 2020-01-21T09:23:06.493 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAACCD02 |
| NCBI TaxID | 38290 |
| Isolation Source | cornea |
| Geo Location | Sweden: Orebro |
