Genome Meta Information: Streptococcus rubneri CCUG 66516 (GCA_016642415.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_016642415.1 | ||
| HOMD Taxon-ID | HMT-0415 | ||
| Species Name (in use by HOMD) | Streptococcus rubneri | ||
| Organism Name (as deposited) | HMT-415 Streptococcus rubneri CCUG 66516 | ||
| Strain or Isolate | CCUG 66516 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus rubneri |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 80.8 | ||
| Contigs |
|
||
| Total Sequence Length | 2,145,322 (bp) | ||
| GC Percentage | 41.63 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/642/415/GCA_016642415.1_ASM1664241v1 | ||
| CDS | 1976 | ||
| Genes | 2060 | ||
| mRNA | 2060 | ||
| misc RNA | 33 | ||
| rRNA | 3 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.96 % | ||
| CheckM Completeness | 99.9 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1664241v1 |
| GenBank Assembly Accession | GCA_016642415.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_016642415.1 [NCBI] |
| BioSample | SAMN06134731 [NCBI] |
| BioProject | PRJNA302716 [NCBI] |
| Submitter | TAILORED-Treatment project |
| Submission Date | 2016-12-13T08:47:02.923 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | MRXY01 |
| NCBI TaxID | 1234680 |
| Isolation Source | throat of a healthy human volunteer |
| Geo Location | Germany:Karlsruhe |
