Genome Meta Information: Streptococcus mitis S022-V7-A3 (GCA_016658865.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_016658865.1 | ||
| HOMD Taxon-ID | HMT-677 | ||
| Species Name (in use by HOMD) | Streptococcus mitis | ||
| Organism Name (as deposited) | HMT-677 Streptococcus mitis S022-V7-A3 | ||
| Strain or Isolate | S022-V7-A3 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus mitis_BT |
||
| Sequencing Technology | Illumina HiSeq; Oxford Nanopore MinION | ||
| Genome Coverage | 250.0x | ||
| Contigs |
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| Total Sequence Length | 2,033,396 (bp) | ||
| GC Percentage | 40.24 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/658/865/GCA_016658865.1_ASM1665886v1 | ||
| CDS | 1931 | ||
| Genes | 2058 | ||
| mRNA | 2058 | ||
| misc RNA | 55 | ||
| rRNA | 12 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 93.9 % | ||
| CheckM Completeness | 99.82 % | ||
| CheckM Contamination | 0.64 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.12 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP Site] | ||
| Pangenomes (Beta) |
View in Anvi`o:
Streptococcus__mitis__HMT_677
(Interactive)
View SVG Image |
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| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1665886v1 |
| GenBank Assembly Accession | GCA_016658865.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_016658865.1 [NCBI] |
| BioSample | SAMN17258151 [NCBI] |
| BioProject | PRJNA690734 [NCBI] |
| Submitter | University of Siena |
| Submission Date | 2021-01-08T10:03:04.556 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 28037 |
| Isolation Source | saliva |
| Geo Location | United Kingdom |
