Genome Meta Information: Staphylococcus haemolyticus MSA_JNM60C2 (GCA_016695445.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_016695445.1 | ||
| HOMD Taxon-ID | HMT-0120 | ||
| Species Name (in use by HOMD) | Staphylococcus haemolyticus | ||
| Organism Name (as deposited) | HMT-120 Staphylococcus haemolyticus MSA_JNM60C2 | ||
| Strain or Isolate | MSA_JNM60C2 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus haemolyticus |
||
| Sequencing Technology | Ilumina | ||
| Genome Coverage | 421 | ||
| Contigs |
|
||
| Total Sequence Length | 2,511,057 (bp) | ||
| GC Percentage | 32.82 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/695/445/GCA_016695445.1_ASM1669544v1 | ||
| CDS | 2431 | ||
| Genes | 2611 | ||
| mRNA | 2611 | ||
| misc RNA | 89 | ||
| rRNA | 21 | ||
| tRNA | 69 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.35 % | ||
| CheckM Completeness | 99.25 % | ||
| CheckM Contamination | 0.08 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1669544v1 |
| GenBank Assembly Accession | GCA_016695445.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_016695445.1 [NCBI] |
| BioSample | SAMN16871746 [NCBI] |
| BioProject | PRJNA669251 [NCBI] |
| Submitter | National Institute of Biomedical Genomics |
| Submission Date | 2020-11-23T01:55:09.610 |
| Assembly Method | |
| Assembly Level | Chromosome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1283 |
| Isolation Source | Preterm neonate vaginally delivered and admitted to SNCU with respiratory distre |
| Geo Location | India: College of Medicine and |
