Genome Meta Information: Staphylococcus saccharolyticus DVP1-17-1678 (GCA_016791565.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_016791565.1 | ||
| HOMD Taxon-ID | HMT-0789 | ||
| Species Name (in use by HOMD) | Staphylococcus saccharolyticus | ||
| Organism Name (as deposited) | HMT-789 Staphylococcus saccharolyticus DVP1-17-1678 | ||
| Strain or Isolate | DVP1-17-1678 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus saccharolyticus |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 200 | ||
| Contigs |
|
||
| Total Sequence Length | 2,348,904 (bp) | ||
| GC Percentage | 32.02 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/791/565/GCA_016791565.1_ASM1679156v1 | ||
| CDS | 2652 | ||
| Genes | 2763 | ||
| mRNA | 2763 | ||
| misc RNA | 52 | ||
| rRNA | 8 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.98 % | ||
| CheckM Completeness | 88.04 % | ||
| CheckM Contamination | 1.74 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1679156v1 |
| GenBank Assembly Accession | GCA_016791565.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_016791565.1 [NCBI] |
| BioSample | SAMN17199938 [NCBI] |
| BioProject | PRJNA689124 [NCBI] |
| Submitter | Aarhus University |
| Submission Date | 2021-01-02T08:38:06.103 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAENGV01 |
| NCBI TaxID | 33028 |
| Isolation Source | periprosthetic tissue |
| Geo Location | Sweden: Orebro |
