Genome Meta Information: Staphylococcus lugdunensis s38 (GCA_016808995.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_016808995.1 | ||
| HOMD Taxon-ID | HMT-0128 | ||
| Species Name (in use by HOMD) | Staphylococcus lugdunensis | ||
| Organism Name (as deposited) | HMT-128 Staphylococcus lugdunensis s38 | ||
| Strain or Isolate | s38 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus lugdunensis |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 670 | ||
| Contigs |
|
||
| Total Sequence Length | 2,535,435 (bp) | ||
| GC Percentage | 33.66 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/808/995/GCA_016808995.1_ASM1680899v1 | ||
| CDS | 2365 | ||
| Genes | 2496 | ||
| mRNA | 2496 | ||
| misc RNA | 88 | ||
| rRNA | 4 | ||
| tRNA | 38 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.45 % | ||
| CheckM Completeness | 96.92 % | ||
| CheckM Contamination | 0.34 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1680899v1 |
| GenBank Assembly Accession | GCA_016808995.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_016808995.1 [NCBI] |
| BioSample | SAMN09865974 [NCBI] |
| BioProject | PRJNA486830 [NCBI] |
| Submitter | NASA Ames Research Center |
| Submission Date | 2018-08-20T15:49:07.380 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | QVUS01 |
| NCBI TaxID | 28035 |
| Isolation Source | |
| Geo Location | USA: International Space Stati |
