Genome Meta Information: Cutibacterium avidum KCTC 5339 (GCA_016834535.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_016834535.1 | ||
| HOMD Taxon-ID | HMT-0552 | ||
| Species Name (in use by HOMD) | Cutibacterium avidum | ||
| Organism Name (as deposited) | HMT-552 Cutibacterium avidum KCTC 5339 | ||
| Strain or Isolate | KCTC 5339 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium; s__Cutibacterium avidum |
||
| Sequencing Technology | PacBio RSII | ||
| Genome Coverage | 318 | ||
| Contigs |
|
||
| Total Sequence Length | 2,554,716 (bp) | ||
| GC Percentage | 63.4 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/834/535/GCA_016834535.1_ASM1683453v1 | ||
| CDS | 2299 | ||
| Genes | 2378 | ||
| mRNA | 2378 | ||
| misc RNA | 22 | ||
| rRNA | 9 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 97.38 % | ||
| CheckM Contamination | 0.48 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1683453v1 |
| GenBank Assembly Accession | GCA_016834535.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_016834535.1 [NCBI] |
| BioSample | SAMN17320327 [NCBI] |
| BioProject | PRJNA545582 [NCBI] |
| Submitter | korea research institute of bioscience and biotechnology |
| Submission Date | 2021-01-15T03:23:09.053 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 33010 |
| Isolation Source | |
| Geo Location | South Korea: Jeongeup-si |
