Genome Meta Information: Streptococcus oralis SF100 (GCA_016888845.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_016888845.1 | ||
| HOMD Taxon-ID | HMT-0707 | ||
| Species Name (in use by HOMD) | Streptococcus oralis | ||
| Organism Name (as deposited) | HMT-707 Streptococcus oralis subsp. oralis SF100 | ||
| Strain or Isolate | SF100 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus oralis |
||
| Sequencing Technology | Pacbio | ||
| Genome Coverage | 16.36 | ||
| Contigs |
|
||
| Total Sequence Length | 1,985,912 (bp) | ||
| GC Percentage | 41.5 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/888/845/GCA_016888845.1_ASM1688884v1 | ||
| CDS | 1869 | ||
| Genes | 2002 | ||
| mRNA | 2002 | ||
| misc RNA | 37 | ||
| rRNA | 15 | ||
| tRNA | 80 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.62 % | ||
| CheckM Completeness | 99.33 % | ||
| CheckM Contamination | 0.4 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1688884v1 |
| GenBank Assembly Accession | GCA_016888845.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_016888845.1 [NCBI] |
| BioSample | SAMN07428910 [NCBI] |
| BioProject | PRJNA358614 [NCBI] |
| Submitter | University of California San Francisco |
| Submission Date | 2017-07-31T15:50:05.407 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1303 |
| Isolation Source | blood |
| Geo Location | USA: San Francisco |
