Genome Meta Information: Haemophilus parahaemolyticus FDAARGOS_1199 (GCA_016889385.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_016889385.1 | ||
| HOMD Taxon-ID | HMT-0945 | ||
| Species Name (in use by HOMD) | Haemophilus parahaemolyticus | ||
| Organism Name (as deposited) | HMT-945 Haemophilus parahaemolyticus FDAARGOS_1199 | ||
| Strain or Isolate | FDAARGOS_1199 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A; s__Haemophilus_A parahaemolyticus |
||
| Sequencing Technology | Pacbio; Illumina | ||
| Genome Coverage | 2038.68 | ||
| Contigs |
|
||
| Total Sequence Length | 2,093,459 (bp) | ||
| GC Percentage | 40.29 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/889/385/GCA_016889385.1_ASM1688938v1 | ||
| CDS | 1954 | ||
| Genes | 2059 | ||
| mRNA | 2059 | ||
| misc RNA | 26 | ||
| rRNA | 18 | ||
| tRNA | 60 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 99.36 % | ||
| CheckM Contamination | 0.73 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1688938v1 |
| GenBank Assembly Accession | GCA_016889385.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_016889385.1 [NCBI] |
| BioSample | SAMN16357341 [NCBI] |
| BioProject | PRJNA231221 [NCBI] |
| Submitter | US Food and Drug Administration |
| Submission Date | 2020-10-03T14:56:12.130 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 735 |
| Isolation Source | missing |
| Geo Location | Germany: Braunschweig |
