Genome Meta Information: Bacteroides caccae FDAARGOS_1219 (GCA_016889745.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_016889745.1 | ||
| HOMD Taxon-ID | HMT-967 | ||
| Species Name (in use by HOMD) | Bacteroides caccae | ||
| Organism Name (as deposited) | HMT-967 Bacteroides caccae FDAARGOS_1219 | ||
| Strain or Isolate | FDAARGOS_1219 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides; s__Bacteroides caccae |
||
| Sequencing Technology | Pacbio; Illumina | ||
| Genome Coverage | 1311.2x | ||
| Contigs |
|
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| Total Sequence Length | 4,570,957 (bp) | ||
| GC Percentage | 41.91 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/889/745/GCA_016889745.1_ASM1688974v1 | ||
| CDS | 3671 | ||
| Genes | 3770 | ||
| mRNA | 3770 | ||
| misc RNA | 13 | ||
| rRNA | 15 | ||
| tRNA | 70 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 99.22 % | ||
| CheckM Contamination | 0.08 % | ||
| CheckM2 Completeness | 99.95 % | ||
| CheckM2 Contamination | 0.53 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1688974v1 |
| GenBank Assembly Accession | GCA_016889745.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_016889745.1 [NCBI] |
| BioSample | SAMN16357361 [NCBI] |
| BioProject | PRJNA231221 [NCBI] |
| Submitter | US Food and Drug Administration |
| Submission Date | 2020-10-03T14:56:12.496 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 47678 |
| Isolation Source | missing |
| Geo Location | USA:MD |
