Genome Meta Information: Kocuria palustris TAGA27 (GCA_016907795.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_016907795.1 | ||
| HOMD Taxon-ID | HMT-0084 | ||
| Species Name (in use by HOMD) | Kocuria palustris | ||
| Organism Name (as deposited) | HMT-084 Kocuria palustris TAGA27 | ||
| Strain or Isolate | TAGA27 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Kocuria; s__Kocuria palustris |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 334 | ||
| Contigs |
|
||
| Total Sequence Length | 2,897,960 (bp) | ||
| GC Percentage | 70.25 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/907/795/GCA_016907795.1_ASM1690779v1 | ||
| CDS | 2507 | ||
| Genes | 2592 | ||
| mRNA | 2592 | ||
| misc RNA | 27 | ||
| rRNA | 9 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.97 % | ||
| CheckM Completeness | 99.25 % | ||
| CheckM Contamination | 0.84 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1690779v1 |
| GenBank Assembly Accession | GCA_016907795.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_016907795.1 [NCBI] |
| BioSample | SAMN17619998 [NCBI] |
| BioProject | PRJNA695763 [NCBI] |
| Submitter | DOE Joint Genome Institute |
| Submission Date | 2021-01-28T19:43:05.383 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAFBCR01 |
| NCBI TaxID | 71999 |
| Isolation Source | missing |
| Geo Location | Hungary |
