Genome Meta Information: Bifidobacterium longum KCTC 3128 (GCA_017132775.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_017132775.1 | ||
| HOMD Taxon-ID | HMT-0862 | ||
| Species Name (in use by HOMD) | Bifidobacterium longum | ||
| Organism Name (as deposited) | HMT-862 Bifidobacterium longum KCTC 3128 | ||
| Strain or Isolate | KCTC 3128 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium; s__Bifidobacterium longum |
||
| Sequencing Technology | PacBio RSII | ||
| Genome Coverage | 292.23 | ||
| Contigs |
|
||
| Total Sequence Length | 2,403,825 (bp) | ||
| GC Percentage | 60.33 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/132/775/GCA_017132775.1_ASM1713277v1 | ||
| CDS | 1965 | ||
| Genes | 2067 | ||
| mRNA | 2067 | ||
| misc RNA | 13 | ||
| rRNA | 8 | ||
| tRNA | 80 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 98.91 % | ||
| CheckM Contamination | 0.58 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1713277v1 |
| GenBank Assembly Accession | GCA_017132775.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_017132775.1 [NCBI] |
| BioSample | SAMN18035029 [NCBI] |
| BioProject | PRJNA704186 [NCBI] |
| Submitter | Korea University |
| Submission Date | 2021-02-23T02:22:15.980 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1679 |
| Isolation Source | intestine of adult |
| Geo Location | Missing |
