Genome Meta Information: Treponema medium T19 (GCA_017161225.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_017161225.1 | ||
| HOMD Taxon-ID | HMT-0667 | ||
| Species Name (in use by HOMD) | Treponema medium | ||
| Organism Name (as deposited) | HMT-667 Treponema medium T19 | ||
| Strain or Isolate | T19 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema; s__Treponema medium |
||
| Sequencing Technology | 454; Illumina MiSeq | ||
| Genome Coverage | 1 | ||
| Contigs |
|
||
| Total Sequence Length | 2,886,632 (bp) | ||
| GC Percentage | 44.25 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/161/225/GCA_017161225.1_ASM1716122v1 | ||
| CDS | 2487 | ||
| Genes | 2554 | ||
| mRNA | 2554 | ||
| misc RNA | 7 | ||
| rRNA | 6 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.29 % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 6.36 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1716122v1 |
| GenBank Assembly Accession | GCA_017161225.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_017161225.1 [NCBI] |
| BioSample | SAMN08563942 [NCBI] |
| BioProject | PRJNA434540 [NCBI] |
| Submitter | University of Liverpool |
| Submission Date | 2018-02-19T06:16:02.677 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 58231 |
| Isolation Source | Dairy Farm cow with Bovine Digital Dermatitis |
| Geo Location | United Kingdom |
