Genome Meta Information: Stenotrophomonas nitritireducens SCN18_13_7_16_R1_B_68_91 (GCA_017304535.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_017304535.1 | ||
| HOMD Taxon-ID | HMT-0037 | ||
| Species Name (in use by HOMD) | Stenotrophomonas nitritireducens | ||
| Organism Name (as deposited) | HMT-037 Stenotrophomonas nitritireducens SCN18_13_7_16_R1_B_68_91 | ||
| Strain or Isolate | SCN18_13_7_16_R1_B_68_91 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas; s__Stenotrophomonas nitritireducens |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 91 | ||
| Contigs |
|
||
| Total Sequence Length | 4,001,815 (bp) | ||
| GC Percentage | 68.49 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/304/535/GCA_017304535.1_ASM1730453v1 | ||
| CDS | 3475 | ||
| Genes | 3637 | ||
| mRNA | 3637 | ||
| misc RNA | 98 | ||
| rRNA | 1 | ||
| tRNA | 62 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.58 % | ||
| CheckM Completeness | 90.77 % | ||
| CheckM Contamination | 5.56 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1730453v1 |
| GenBank Assembly Accession | GCA_017304535.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_017304535.1 [NCBI] |
| BioSample | SAMN18061499 [NCBI] |
| BioProject | PRJNA629336 [NCBI] |
| Submitter | Jill Banfield Lab (University of California Berkeley) |
| Submission Date | 2021-02-25T23:59:08.196 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAFKME01 |
| NCBI TaxID | 83617 |
| Isolation Source | biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effl |
| Geo Location | South Africa: Capetown |
