Genome Meta Information: Capnocytophaga bilenii Marseille-Q4570 (GCA_017565765.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_017565765.1 | ||
| HOMD Taxon-ID | HMT-0332 | ||
| Species Name (in use by HOMD) | Capnocytophaga bilenii | ||
| Organism Name (as deposited) | HMT-332 Capnocytophaga bilenii Marseille-Q4570 | ||
| Strain or Isolate | Marseille-Q4570 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga; s__Capnocytophaga bilenii |
||
| Sequencing Technology | Illumina; Oxford Nanopore GridION | ||
| Genome Coverage | 31 | ||
| Contigs |
|
||
| Total Sequence Length | 2,730,939 (bp) | ||
| GC Percentage | 38.49 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/565/765/GCA_017565765.1_ASM1756576v1 | ||
| CDS | 2485 | ||
| Genes | 2542 | ||
| mRNA | 2542 | ||
| misc RNA | 6 | ||
| rRNA | 8 | ||
| tRNA | 42 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.06 % | ||
| CheckM Contamination | 0.39 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1756576v1 |
| GenBank Assembly Accession | GCA_017565765.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_017565765.1 [NCBI] |
| BioSample | SAMN18319855 [NCBI] |
| BioProject | PRJNA714882 [NCBI] |
| Submitter | IHU - MI |
| Submission Date | 2021-03-16T11:01:05.453 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JAGDYP01 |
| NCBI TaxID | 2819369 |
| Isolation Source | dental plaque |
| Geo Location | France: Marseille |
