Genome Meta Information: Lachnoanaerobaculum sp. HMT-441 Marseille-Q4761 (GCA_017565785.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_017565785.1 | ||
| HOMD Taxon-ID | HMT-0441 | ||
| Species Name (in use by HOMD) | Lachnoanaerobaculum sp. HMT-441 | ||
| Organism Name (as deposited) | HMT-441 Lachnoanaerobaculum sp. HMT-441 Marseille-Q4761 | ||
| Strain or Isolate | Marseille-Q4761 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum; s__Lachnoanaerobaculum sp000209465 |
||
| Sequencing Technology | Illumina; Oxford Nanopore GridION | ||
| Genome Coverage | 31.91 | ||
| Contigs |
|
||
| Total Sequence Length | 3,419,874 (bp) | ||
| GC Percentage | 35.93 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/565/785/GCA_017565785.1_ASM1756578v1 | ||
| CDS | 3100 | ||
| Genes | 3182 | ||
| mRNA | 3182 | ||
| misc RNA | 21 | ||
| rRNA | 10 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 96.88 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1756578v1 |
| GenBank Assembly Accession | GCA_017565785.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_017565785.1 [NCBI] |
| BioSample | SAMN18319872 [NCBI] |
| BioProject | PRJNA714887 [NCBI] |
| Submitter | IHU - MI |
| Submission Date | 2021-03-16T11:14:03.886 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JAGEKB01 |
| NCBI TaxID | 2819511 |
| Isolation Source | dental plaque |
| Geo Location | France: Marseille |
