Genome Meta Information: Dolosigranulum pigrum KPL3090 (GCA_017655685.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_017655685.1 | ||
| HOMD Taxon-ID | HMT-0813 | ||
| Species Name (in use by HOMD) | Dolosigranulum pigrum | ||
| Organism Name (as deposited) | HMT-813 Dolosigranulum pigrum KPL3090 | ||
| Strain or Isolate | KPL3090 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum; s__Dolosigranulum pigrum |
||
| Sequencing Technology | PacBio Sequel | ||
| Genome Coverage | 423 | ||
| Contigs |
|
||
| Total Sequence Length | 2,009,643 (bp) | ||
| GC Percentage | 39.74 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/655/685/GCA_017655685.1_ASM1765568v1 | ||
| CDS | 1891 | ||
| Genes | 2042 | ||
| mRNA | 2042 | ||
| misc RNA | 82 | ||
| rRNA | 12 | ||
| tRNA | 56 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.57 % | ||
| CheckM Completeness | 98.56 % | ||
| CheckM Contamination | 1.78 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1765568v1 |
| GenBank Assembly Accession | GCA_017655685.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_017655685.1 [NCBI] |
| BioSample | SAMN11664200 [NCBI] |
| BioProject | PRJNA379818 [NCBI] |
| Submitter | Forsyth Institute |
| Submission Date | 2019-05-16T19:11:04.400 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 29394 |
| Isolation Source | nostril |
| Geo Location | USA: MA |
