Genome Meta Information: Bifidobacterium dentium E7 (GCA_017743215.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_017743215.1 | ||
| HOMD Taxon-ID | HMT-0588 | ||
| Species Name (in use by HOMD) | Bifidobacterium dentium | ||
| Organism Name (as deposited) | HMT-588 Bifidobacterium dentium E7 | ||
| Strain or Isolate | E7 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium; s__Bifidobacterium dentium |
||
| Sequencing Technology | PacBio Sequel | ||
| Genome Coverage | 1000 | ||
| Contigs |
|
||
| Total Sequence Length | 2,552,511 (bp) | ||
| GC Percentage | 58.29 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/743/215/GCA_017743215.1_ASM1774321v1 | ||
| CDS | 2050 | ||
| Genes | 2127 | ||
| mRNA | 2127 | ||
| misc RNA | 9 | ||
| rRNA | 9 | ||
| tRNA | 58 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.94 % | ||
| CheckM Completeness | 90.19 % | ||
| CheckM Contamination | 0.82 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1774321v1 |
| GenBank Assembly Accession | GCA_017743215.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_017743215.1 [NCBI] |
| BioSample | SAMN18520779 [NCBI] |
| BioProject | PRJNA718012 [NCBI] |
| Submitter | Northeast Agricultural University |
| Submission Date | 2021-03-28T05:50:04.883 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1689 |
| Isolation Source | Feces of healthy 3-month-old male infants |
| Geo Location | China:Harbin |
