Genome Meta Information: Aggregatibacter sp. HMT-458 2125159857 (GCA_017798005.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_017798005.1 | ||
| HOMD Taxon-ID | HMT-458 | ||
| Species Name (in use by HOMD) | Aggregatibacter sp. HMT-458 | ||
| Organism Name (as deposited) | HMT-458 Aggregatibacter sp. HMT-458 2125159857 | ||
| Strain or Isolate | 2125159857 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter; s__Aggregatibacter sp000466335 |
||
| Sequencing Technology | Illumina NextSeq; Oxford Nanopore GridION | ||
| Genome Coverage | 183.0x | ||
| Contigs |
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| Total Sequence Length | 1,999,512 (bp) | ||
| GC Percentage | 43.02 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/798/005/GCA_017798005.1_ASM1779800v1 | ||
| CDS | 1851 | ||
| Genes | 1954 | ||
| mRNA | 1954 | ||
| misc RNA | 30 | ||
| rRNA | 17 | ||
| tRNA | 55 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.66 % | ||
| CheckM Contamination | 0.45 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.04 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1779800v1 |
| GenBank Assembly Accession | GCA_017798005.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_017798005.1 [NCBI] |
| BioSample | SAMN18435607 [NCBI] |
| BioProject | PRJNA716419 [NCBI] |
| Submitter | Queensland Health Forensic and Scientific Services |
| Submission Date | 2021-03-22T22:39:06.273 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 2820817 |
| Isolation Source | Blood culture |
| Geo Location | Australia |
