Genome Meta Information: Treponema parvum ATCC 700770 (GCA_017893965.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_017893965.1 | ||
| HOMD Taxon-ID | HMT-0724 | ||
| Species Name (in use by HOMD) | Treponema parvum | ||
| Organism Name (as deposited) | HMT-724 Treponema parvum ATCC 700770 | ||
| Strain or Isolate | ATCC 700770 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D; s__Treponema_D parvum |
||
| Sequencing Technology | Illumina HiSeq; Oxford Nanopore MiniION | ||
| Genome Coverage | 921 | ||
| Contigs |
|
||
| Total Sequence Length | 2,658,287 (bp) | ||
| GC Percentage | 43.98 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/893/965/GCA_017893965.1_ASM1789396v1 | ||
| CDS | 2290 | ||
| Genes | 2348 | ||
| mRNA | 2348 | ||
| misc RNA | 4 | ||
| rRNA | 6 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1789396v1 |
| GenBank Assembly Accession | GCA_017893965.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_017893965.1 [NCBI] |
| BioSample | SAMN15062831 [NCBI] |
| BioProject | PRJNA284866 [NCBI] |
| Submitter | The University of Hong Kong |
| Submission Date | 2020-05-30T05:32:04.143 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 138851 |
| Isolation Source | dental plaque |
| Geo Location | missing |
