Genome Meta Information: Streptococcus lactarius CCUG 66490 (GCA_018127725.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018127725.1 | ||
| HOMD Taxon-ID | HMT-0948 | ||
| Species Name (in use by HOMD) | Streptococcus lactarius | ||
| Organism Name (as deposited) | HMT-948 Streptococcus lactarius CCUG 66490 | ||
| Strain or Isolate | CCUG 66490 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus lactarius |
||
| Sequencing Technology | PacBio Sequel | ||
| Genome Coverage | 354 | ||
| Contigs |
|
||
| Total Sequence Length | 2,144,372 (bp) | ||
| GC Percentage | 41.61 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/127/725/GCA_018127725.1_ASM1812772v1 | ||
| CDS | 1991 | ||
| Genes | 2123 | ||
| mRNA | 2123 | ||
| misc RNA | 57 | ||
| rRNA | 12 | ||
| tRNA | 62 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.91 % | ||
| CheckM Completeness | 99.6 % | ||
| CheckM Contamination | 0.27 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1812772v1 |
| GenBank Assembly Accession | GCA_018127725.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_018127725.1 [NCBI] |
| BioSample | SAMN18352172 [NCBI] |
| BioProject | PRJNA282954 [NCBI] |
| Submitter | The Forsyth Institute |
| Submission Date | 2021-03-18T16:33:06.393 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 684066 |
| Isolation Source | human breast milk |
| Geo Location | Spain |
