Taxon Table | Genome Table
Genome Meta Information:
Fusobacterium
necrophorum
DD5 (GCA_018205295.1)
| HOMD Genome-ID |
GCA_018205295.1
|
| HOMD Taxon-ID |
HMT-0690
|
| Species Name (in use by HOMD) |
Fusobacterium necrophorum
|
| Organism Name (as deposited) |
HMT-690 Fusobacterium necrophorum DD5
|
| Strain or Isolate |
DD5
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C;
s__Fusobacterium_C necrophorum |
| Sequencing Technology |
Illumina HiSeq
|
| Genome Coverage |
60
|
| Contigs |
Number of Contigs: 181
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,645,633 (bp) |
| GC Percentage |
34.09
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/205/295/GCA_018205295.1_ASM1820529v1
|
| CDS |
2318
|
| Genes |
2389
|
| mRNA |
2389
|
| misc RNA |
23
|
| rRNA |
3
|
| tRNA |
44
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
99.05 %
|
| CheckM Completeness |
97.48 %
|
| CheckM Contamination |
15.74 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
3 Contigs
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM1820529v1
|
| GenBank Assembly Accession |
GCA_018205295.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_018205295.1
[NCBI]
|
| BioSample |
SAMN16729904
[NCBI]
|
| BioProject |
PRJNA676053
[NCBI]
|
| Submitter |
University of Calgary
|
| Submission Date |
2020-11-10T19:27:04.370
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
JADRHJ01
|
| NCBI TaxID |
859
|
| Isolation Source |
Digital dermatitis lesion
|
| Geo Location |
Canada: Calgary
|
