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Genome Meta Information:
Bacteroides
pyogenes
DD33 (GCA_018206295.1)
| HOMD Genome-ID |
GCA_018206295.1
|
| HOMD Taxon-ID |
HMT-787
|
| Species Name (in use by HOMD) |
Bacteroides pyogenes
|
| Organism Name (as deposited) |
HMT-787 Bacteroides pyogenes DD33
|
| Strain or Isolate |
DD33
|
GTDB (V)
Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;
s__Bacteroides pyogenes |
| Sequencing Technology |
Illumina HiSeq
|
| Genome Coverage |
60.0x
|
| Contigs |
Number of Contigs: 132
|
[Open
in Genome Viewer]
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Sequence]
[Linkout to
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|
|
| Total Sequence Length |
3,347,772 (bp) |
| GC Percentage |
46.09
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/206/295/GCA_018206295.1_ASM1820629v1
|
| CDS |
2740
|
| Genes |
2829
|
| mRNA |
2829
|
| misc RNA |
25
|
| rRNA |
3
|
| tRNA |
60
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
98.83 %
|
| CheckM Completeness |
99.25 %
|
| CheckM Contamination |
0 %
|
| CheckM2 Completeness |
99.99 %
|
| CheckM2 Contamination |
0.1 %
|
| CRISPR-cas |
3 Contigs
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM1820629v1
|
| GenBank Assembly Accession |
GCA_018206295.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_018206295.1
[NCBI]
|
| BioSample |
SAMN16729932
[NCBI]
|
| BioProject |
PRJNA676053
[NCBI]
|
| Submitter |
University of Calgary
|
| Submission Date |
2020-11-10T19:27:04.830
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
JADRGH01
|
| NCBI TaxID |
310300
|
| Isolation Source |
Digital dermatitis lesion
|
| Geo Location |
Canada: Calgary
|
