Genome Meta Information: Fusobacterium necrophorum DD37 (GCA_018206505.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018206505.1 | ||
| HOMD Taxon-ID | HMT-0690 | ||
| Species Name (in use by HOMD) | Fusobacterium necrophorum | ||
| Organism Name (as deposited) | HMT-690 Fusobacterium necrophorum DD37 | ||
| Strain or Isolate | DD37 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C; s__Fusobacterium_C necrophorum |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 60 | ||
| Contigs |
|
||
| Total Sequence Length | 2,082,099 (bp) | ||
| GC Percentage | 35.2 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/206/505/GCA_018206505.1_ASM1820650v1 | ||
| CDS | 1932 | ||
| Genes | 1997 | ||
| mRNA | 1997 | ||
| misc RNA | 17 | ||
| rRNA | 2 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.7 % | ||
| CheckM Completeness | 91.19 % | ||
| CheckM Contamination | 1.62 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1820650v1 |
| GenBank Assembly Accession | GCA_018206505.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_018206505.1 [NCBI] |
| BioSample | SAMN16729936 [NCBI] |
| BioProject | PRJNA676053 [NCBI] |
| Submitter | University of Calgary |
| Submission Date | 2020-11-10T19:27:04.893 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JADRGD01 |
| NCBI TaxID | 143387 |
| Isolation Source | Digital dermatitis lesion |
| Geo Location | Canada: Calgary |
