Genome Meta Information: Bacteroides xylanisolvens APCS1/XY (GCA_018279805.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018279805.1 | ||
| HOMD Taxon-ID | HMT-972 | ||
| Species Name (in use by HOMD) | Bacteroides xylanisolvens | ||
| Organism Name (as deposited) | HMT-972 Bacteroides xylanisolvens APCS1/XY | ||
| Strain or Isolate | APCS1/XY | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides; s__Bacteroides xylanisolvens |
||
| Sequencing Technology | Illumina HiSeq,; Oxford Nanopore MinION | ||
| Genome Coverage | 43.0x | ||
| Contigs |
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| Total Sequence Length | 6,470,801 (bp) | ||
| GC Percentage | 42.24 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/279/805/GCA_018279805.1_ASM1827980v1 | ||
| CDS | 5295 | ||
| Genes | 5409 | ||
| mRNA | 5409 | ||
| misc RNA | 29 | ||
| rRNA | 15 | ||
| tRNA | 69 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.39 % | ||
| CheckM Completeness | 99.46 % | ||
| CheckM Contamination | 0.22 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.64 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1827980v1 |
| GenBank Assembly Accession | GCA_018279805.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_018279805.1 [NCBI] |
| BioSample | SAMN12372036 [NCBI] |
| BioProject | PRJNA556867 [NCBI] |
| Submitter | University College Cork |
| Submission Date | 2019-07-26T12:41:06.900 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 371601 |
| Isolation Source | feces |
| Geo Location | Ireland:Cork |
