Genome Meta Information: Lacticaseibacillus casei FBL6 (GCA_018363095.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018363095.1 | ||
| HOMD Taxon-ID | HMT-0568 | ||
| Species Name (in use by HOMD) | Lacticaseibacillus casei | ||
| Organism Name (as deposited) | HMT-568 Lacticaseibacillus casei FBL6 | ||
| Strain or Isolate | FBL6 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus; s__Lacticaseibacillus casei |
||
| Sequencing Technology | PacBio Sequel | ||
| Genome Coverage | 496.678 | ||
| Contigs |
|
||
| Total Sequence Length | 3,138,294 (bp) | ||
| GC Percentage | 47.92 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/363/095/GCA_018363095.1_ASM1836309v1 | ||
| CDS | 2893 | ||
| Genes | 3003 | ||
| mRNA | 3003 | ||
| misc RNA | 35 | ||
| rRNA | 15 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.74 % | ||
| CheckM Completeness | 93.02 % | ||
| CheckM Contamination | 2.64 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1836309v1 |
| GenBank Assembly Accession | GCA_018363095.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_018363095.1 [NCBI] |
| BioSample | SAMN19017040 [NCBI] |
| BioProject | PRJNA727399 [NCBI] |
| Submitter | Kyung Hee University |
| Submission Date | 2021-05-04T22:28:05.272 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1582 |
| Isolation Source | Raw milk |
| Geo Location | South Korea |
