Genome Meta Information: Urinicoccus timonensis L3_108_103G1_dasL3_108_103G1_concoct_38 (GCA_018363925.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018363925.1 | ||
| HOMD Taxon-ID | HMT-0375 | ||
| Species Name (in use by HOMD) | Urinicoccus timonensis | ||
| Organism Name (as deposited) | HMT-375 Urinicoccus timonensis L3_108_103G1_dasL3_108_103G1_concoct_38 | ||
| Strain or Isolate | L3_108_103G1_dasL3_108_103G1_concoct_38 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Urinicoccus; s__Urinicoccus timonensis |
||
| Sequencing Technology | Illumina NovaSeq 6000 | ||
| Genome Coverage | 0.0212 | ||
| Contigs |
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| Total Sequence Length | 1,604,899 (bp) | ||
| GC Percentage | 42.65 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/363/925/GCA_018363925.1_ASM1836392v1 | ||
| CDS | 1533 | ||
| Genes | 1609 | ||
| mRNA | 1609 | ||
| misc RNA | 31 | ||
| rRNA | 0 | ||
| tRNA | 44 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 0 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1836392v1 |
| GenBank Assembly Accession | GCA_018363925.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN17800986 [NCBI] |
| BioProject | PRJNA698986 [NCBI] |
| Submitter | University of California, Berkeley |
| Submission Date | 2021-02-04T18:19:19.573 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAGZNB01 |
| NCBI TaxID | 712430 |
| Isolation Source | infant feces |
| Geo Location | USA: Pittsburgh, Magee-Womens |
