Genome Meta Information: Veillonella parvula L3_108_031G1_dasL3_108_031G1_concoct_20 (GCA_018364005.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018364005.1 | ||
| HOMD Taxon-ID | HMT-0161 | ||
| Species Name (in use by HOMD) | Veillonella parvula | ||
| Organism Name (as deposited) | HMT-161 Veillonella parvula L3_108_031G1_dasL3_108_031G1_concoct_20 | ||
| Strain or Isolate | L3_108_031G1_dasL3_108_031G1_concoct_20 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella; s__Veillonella parvula_F |
||
| Sequencing Technology | Illumina NovaSeq 6000 | ||
| Genome Coverage | 13.6508 | ||
| Contigs |
|
||
| Total Sequence Length | 2,213,853 (bp) | ||
| GC Percentage | 37.8 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/364/005/GCA_018364005.1_ASM1836400v1 | ||
| CDS | 2033 | ||
| Genes | 2106 | ||
| mRNA | 2106 | ||
| misc RNA | 24 | ||
| rRNA | 4 | ||
| tRNA | 44 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.58 % | ||
| CheckM Completeness | 98.05 % | ||
| CheckM Contamination | 2.11 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1836400v1 |
| GenBank Assembly Accession | GCA_018364005.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_018364005.1 [NCBI] |
| BioSample | SAMN17800979 [NCBI] |
| BioProject | PRJNA698986 [NCBI] |
| Submitter | University of California, Berkeley |
| Submission Date | 2021-02-04T18:19:19.453 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAGZMU01 |
| NCBI TaxID | 29466 |
| Isolation Source | infant feces |
| Geo Location | USA: Pittsburgh, Magee-Womens |
