Genome Meta Information: Haemophilus parainfluenzae L3_133_000G1_dasL3_133_000G1_concoct_17 (GCA_018365435.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018365435.1 | ||
| HOMD Taxon-ID | HMT-0718 | ||
| Species Name (in use by HOMD) | Haemophilus parainfluenzae | ||
| Organism Name (as deposited) | HMT-718 Haemophilus parainfluenzae L3_133_000G1_dasL3_133_000G1_concoct_17 | ||
| Strain or Isolate | L3_133_000G1_dasL3_133_000G1_concoct_17 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D; s__Haemophilus_D parainfluenzae_AD |
||
| Sequencing Technology | Illumina NovaSeq 6000 | ||
| Genome Coverage | 6.6117 | ||
| Contigs |
|
||
| Total Sequence Length | 1,983,945 (bp) | ||
| GC Percentage | 39.36 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/365/435/GCA_018365435.1_ASM1836543v1 | ||
| CDS | 1857 | ||
| Genes | 1929 | ||
| mRNA | 1929 | ||
| misc RNA | 25 | ||
| rRNA | 0 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.2 % | ||
| CheckM Completeness | 0 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1836543v1 |
| GenBank Assembly Accession | GCA_018365435.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN17800907 [NCBI] |
| BioProject | PRJNA698986 [NCBI] |
| Submitter | University of California, Berkeley |
| Submission Date | 2021-02-04T18:19:18.260 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAGZKA01 |
| NCBI TaxID | 729 |
| Isolation Source | infant feces |
| Geo Location | USA: Pittsburgh, Magee-Womens |
