Genome Meta Information: Actinomyces graevenitzii L3_108_000G1_dasL3_108_000G1_metabat.metabat.69 (GCA_018366775.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018366775.1 | ||
| HOMD Taxon-ID | HMT-866 | ||
| Species Name (in use by HOMD) | Actinomyces graevenitzii | ||
| Organism Name (as deposited) | HMT-866 Actinomyces graevenitzii L3_108_000G1_dasL3_108_000G1_metabat.metabat.69 | ||
| Strain or Isolate | L3_108_000G1_dasL3_108_000G1_metabat.metabat.69 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces; s__Actinomyces graevenitzii |
||
| Sequencing Technology | Illumina NovaSeq 6000 | ||
| Genome Coverage | 0.3x | ||
| Contigs |
|
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| Total Sequence Length | 1,959,695 (bp) | ||
| GC Percentage | 57.9 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/366/775/GCA_018366775.1_ASM1836677v1 | ||
| CDS | 1623 | ||
| Genes | 1682 | ||
| mRNA | 1682 | ||
| misc RNA | 9 | ||
| rRNA | 0 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.42 % | ||
| CheckM Contamination | 1.42 % | ||
| CheckM2 Completeness | 98.2 % | ||
| CheckM2 Contamination | 1.21 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1836677v1 |
| GenBank Assembly Accession | GCA_018366775.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN17800840 [NCBI] |
| BioProject | PRJNA698986 [NCBI] |
| Submitter | University of California, Berkeley |
| Submission Date | 2021-02-04T18:19:17.096 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAGZHL01 |
| NCBI TaxID | 55565 |
| Isolation Source | infant feces |
| Geo Location | USA: Pittsburgh, Magee-Womens |
