Genome Meta Information: Gemella haemolysans L3_098_000G1_dasL3_098_000G1_metabat.metabat.70 (GCA_018367315.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018367315.1 | ||
| HOMD Taxon-ID | HMT-0626 | ||
| Species Name (in use by HOMD) | Gemella haemolysans | ||
| Organism Name (as deposited) | HMT-626 Gemella haemolysans clade-626 L3_098_000G1_dasL3_098_000G1_metabat.metabat.70 | ||
| Strain or Isolate | L3_098_000G1_dasL3_098_000G1_metabat.metabat.70 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Gemellaceae;g__Gemella; s__Gemella haemolysans_B |
||
| Sequencing Technology | Illumina NovaSeq 6000 | ||
| Genome Coverage | 0.5294 | ||
| Contigs |
|
||
| Total Sequence Length | 1,776,416 (bp) | ||
| GC Percentage | 30.63 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/367/315/GCA_018367315.1_ASM1836731v1 | ||
| CDS | 1604 | ||
| Genes | 1669 | ||
| mRNA | 1669 | ||
| misc RNA | 31 | ||
| rRNA | 2 | ||
| tRNA | 31 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 93.88 % | ||
| CheckM Completeness | 91.65 % | ||
| CheckM Contamination | 7.2 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1836731v1 |
| GenBank Assembly Accession | GCA_018367315.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_018367315.1 [NCBI] |
| BioSample | SAMN17800812 [NCBI] |
| BioProject | PRJNA698986 [NCBI] |
| Submitter | University of California, Berkeley |
| Submission Date | 2021-02-04T18:19:16.583 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAGZGJ01 |
| NCBI TaxID | 1379 |
| Isolation Source | infant feces |
| Geo Location | USA: Pittsburgh, Magee-Womens |
