Genome Meta Information: Cutibacterium avidum L3_105_000G1_dasL3_105_000G1_concoct_85 (GCA_018370865.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018370865.1 | ||
| HOMD Taxon-ID | HMT-0552 | ||
| Species Name (in use by HOMD) | Cutibacterium avidum | ||
| Organism Name (as deposited) | HMT-552 Cutibacterium avidum L3_105_000G1_dasL3_105_000G1_concoct_85 | ||
| Strain or Isolate | L3_105_000G1_dasL3_105_000G1_concoct_85 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium; s__Cutibacterium avidum |
||
| Sequencing Technology | Illumina NovaSeq 6000 | ||
| Genome Coverage | 32.7325 | ||
| Contigs |
|
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| Total Sequence Length | 2,695,360 (bp) | ||
| GC Percentage | 63.28 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/370/865/GCA_018370865.1_ASM1837086v1 | ||
| CDS | 2400 | ||
| Genes | 2481 | ||
| mRNA | 2481 | ||
| misc RNA | 27 | ||
| rRNA | 4 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 0 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1837086v1 |
| GenBank Assembly Accession | GCA_018370865.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN17800635 [NCBI] |
| BioProject | PRJNA698986 [NCBI] |
| Submitter | University of California, Berkeley |
| Submission Date | 2021-02-04T18:19:12.620 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAGYZO01 |
| NCBI TaxID | 1977903 |
| Isolation Source | infant feces |
| Geo Location | USA: Pittsburgh, Magee-Womens |
