Taxon Table | Genome Table
Genome Meta Information:
Fusobacterium
periodonticum
L2_013_000G1_dasL2_013_000G1_metabat.metabat.61_sub (GCA_018371955.1)
| HOMD Genome-ID |
GCA_018371955.1
|
| HOMD Taxon-ID |
HMT-0201
|
| Species Name (in use by HOMD) |
Fusobacterium periodonticum
|
| Organism Name (as deposited) |
HMT-201 Fusobacterium periodonticum L2_013_000G1_dasL2_013_000G1_metabat.metabat.61_sub
|
| Strain or Isolate |
L2_013_000G1_dasL2_013_000G1_metabat.metabat.61_sub
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;
s__Fusobacterium periodonticum_D |
| Sequencing Technology |
Illumina NovaSeq 6000
|
| Genome Coverage |
9.8223
|
| Contigs |
Number of Contigs: 114
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,270,152 (bp) |
| GC Percentage |
28.11
|
| MAG |
yes
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/371/955/GCA_018371955.1_ASM1837195v1
|
| CDS |
2144
|
| Genes |
2197
|
| mRNA |
2197
|
| misc RNA |
21
|
| rRNA |
0
|
| tRNA |
31
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
93.14 %
|
| CheckM Completeness |
0 %
|
| CheckM Contamination |
0 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
| CRISPR-cas |
1 Contig
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM1837195v1
|
| GenBank Assembly Accession |
GCA_018371955.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
[NCBI]
|
| BioSample |
SAMN17801580
[NCBI]
|
| BioProject |
PRJNA698986
[NCBI]
|
| Submitter |
University of California, Berkeley
|
| Submission Date |
2021-02-04T18:19:30.116
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
JAHAJX01
|
| NCBI TaxID |
860
|
| Isolation Source |
infant feces
|
| Geo Location |
USA: Pittsburgh, Magee-Womens
|
