Genome Meta Information: Anaerococcus octavius L2_059_000G1_dasL2_059_000G1_concoct_90 (GCA_018373895.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018373895.1 | ||
| HOMD Taxon-ID | HMT-017 | ||
| Species Name (in use by HOMD) | Anaerococcus octavius | ||
| Organism Name (as deposited) | HMT-017 Anaerococcus octavius L2_059_000G1_dasL2_059_000G1_concoct_90 | ||
| Strain or Isolate | L2_059_000G1_dasL2_059_000G1_concoct_90 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus; s__Anaerococcus octavius |
||
| Sequencing Technology | Illumina NovaSeq 6000 | ||
| Genome Coverage | 27.3x | ||
| Contigs |
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| Total Sequence Length | 1,973,144 (bp) | ||
| GC Percentage | 30.6 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/373/895/GCA_018373895.1_ASM1837389v1 | ||
| CDS | 1839 | ||
| Genes | 1904 | ||
| mRNA | 1904 | ||
| misc RNA | 30 | ||
| rRNA | 0 | ||
| tRNA | 34 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.39 % | ||
| CheckM Contamination | 0.91 % | ||
| CheckM2 Completeness | 99.56 % | ||
| CheckM2 Contamination | 1.52 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1837389v1 |
| GenBank Assembly Accession | GCA_018373895.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_018373895.1 [NCBI] |
| BioSample | SAMN17801484 [NCBI] |
| BioProject | PRJNA698986 [NCBI] |
| Submitter | University of California, Berkeley |
| Submission Date | 2021-02-04T18:19:28.353 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAHAGF01 |
| NCBI TaxID | 1872515 |
| Isolation Source | infant feces |
| Geo Location | USA: Pittsburgh, Magee-Womens |
