Taxon Table | Genome Table
Genome Meta Information:
Cutibacterium
avidum
L2_047_000G1_dasL2_047_000G1_concoct_98 (GCA_018375595.1)
| HOMD Genome-ID |
GCA_018375595.1
|
| HOMD Taxon-ID |
HMT-0552
|
| Species Name (in use by HOMD) |
Cutibacterium avidum
|
| Organism Name (as deposited) |
HMT-552 Cutibacterium avidum L2_047_000G1_dasL2_047_000G1_concoct_98
|
| Strain or Isolate |
L2_047_000G1_dasL2_047_000G1_concoct_98
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;
s__Cutibacterium avidum |
| Sequencing Technology |
Illumina NovaSeq 6000
|
| Genome Coverage |
105.378
|
| Contigs |
Number of Contigs: 160
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,673,190 (bp) |
| GC Percentage |
63.4
|
| MAG |
yes
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/375/595/GCA_018375595.1_ASM1837559v1
|
| CDS |
2466
|
| Genes |
2545
|
| mRNA |
2545
|
| misc RNA |
28
|
| rRNA |
1
|
| tRNA |
49
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
%
|
| CheckM Completeness |
0 %
|
| CheckM Contamination |
0 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM1837559v1
|
| GenBank Assembly Accession |
GCA_018375595.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
[NCBI]
|
| BioSample |
SAMN17801399
[NCBI]
|
| BioProject |
PRJNA698986
[NCBI]
|
| Submitter |
University of California, Berkeley
|
| Submission Date |
2021-02-04T18:19:26.980
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
JAHACY01
|
| NCBI TaxID |
1977903
|
| Isolation Source |
infant feces
|
| Geo Location |
USA: Pittsburgh, Magee-Womens
|
