Genome Meta Information: Veillonella sp. HMT-780 L2_013_000G1_dasL2_013_000G1_metabat.metabat.46_sub (GCA_018378165.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018378165.1 | ||
| HOMD Taxon-ID | HMT-0780 | ||
| Species Name (in use by HOMD) | Veillonella sp. HMT-780 | ||
| Organism Name (as deposited) | HMT-780 Veillonella sp. HMT-780 L2_013_000G1_dasL2_013_000G1_metabat.metabat.46_sub | ||
| Strain or Isolate | L2_013_000G1_dasL2_013_000G1_metabat.metabat.46_sub | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__F0422; s__F0422 sp001553345 |
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| Sequencing Technology | Illumina NovaSeq 6000 | ||
| Genome Coverage | 32.5468 | ||
| Contigs |
|
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| Total Sequence Length | 1,760,680 (bp) | ||
| GC Percentage | 39.24 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/378/165/GCA_018378165.1_ASM1837816v1 | ||
| CDS | 1602 | ||
| Genes | 1659 | ||
| mRNA | 1659 | ||
| misc RNA | 19 | ||
| rRNA | 2 | ||
| tRNA | 35 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 0 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1837816v1 |
| GenBank Assembly Accession | GCA_018378165.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN17801269 [NCBI] |
| BioProject | PRJNA698986 [NCBI] |
| Submitter | University of California, Berkeley |
| Submission Date | 2021-02-04T18:19:24.816 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAGZXY01 |
| NCBI TaxID | 671229 |
| Isolation Source | infant feces |
| Geo Location | USA: Pittsburgh, Magee-Womens |
