Back To Genome Table
Genome Meta Information:
Actinomyces
graevenitzii
L2_013_000G1_dasL2_013_000G1_concoct_44_sub (GCA_018378275.1)
| HOMD Genome-ID |
GCA_018378275.1
|
| HOMD Taxon-ID |
HMT-866
|
| Species Name (in use by HOMD) |
Actinomyces graevenitzii
|
| Organism Name (as deposited) |
HMT-866 Actinomyces graevenitzii L2_013_000G1_dasL2_013_000G1_concoct_44_sub
|
| Strain or Isolate |
L2_013_000G1_dasL2_013_000G1_concoct_44_sub
|
GTDB (V)
Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;
s__Actinomyces graevenitzii |
| Sequencing Technology |
Illumina NovaSeq 6000
|
| Genome Coverage |
4.1x
|
| Contigs |
Number of Contigs: 185
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,019,214 (bp) |
| GC Percentage |
57.97
|
| MAG |
yes
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/378/275/GCA_018378275.1_ASM1837827v1
|
| CDS |
1663
|
| Genes |
1718
|
| mRNA |
1718
|
| misc RNA |
9
|
| rRNA |
1
|
| tRNA |
44
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
%
|
| CheckM Completeness |
99.01 %
|
| CheckM Contamination |
1.18 %
|
| CheckM2 Completeness |
94.15 %
|
| CheckM2 Contamination |
0.29 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM1837827v1
|
| GenBank Assembly Accession |
GCA_018378275.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
[NCBI]
|
| BioSample |
SAMN17801264
[NCBI]
|
| BioProject |
PRJNA698986
[NCBI]
|
| Submitter |
University of California, Berkeley
|
| Submission Date |
2021-02-04T18:19:24.736
|
| Assembly Method |
|
| Assembly Level |
Scaffold
|
| Sequencing Status |
|
| WGS
Project |
JAGZXT01
|
| NCBI TaxID |
55565
|
| Isolation Source |
infant feces
|
| Geo Location |
USA: Pittsburgh, Magee-Womens
|
