Taxon Table | Genome Table
Genome Meta Information:
Haemophilus
paraphrohaemolyticus
L1_008_364G1_dasL1_008_364G1_concoct_34_sub (GCA_018378345.1)
| HOMD Genome-ID |
GCA_018378345.1
|
| HOMD Taxon-ID |
HMT-0035
|
| Species Name (in use by HOMD) |
Haemophilus paraphrohaemolyticus
|
| Organism Name (as deposited) |
HMT-035 Haemophilus paraphrohaemolyticus L1_008_364G1_dasL1_008_364G1_concoct_34_sub
|
| Strain or Isolate |
L1_008_364G1_dasL1_008_364G1_concoct_34_sub
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A;
s__Haemophilus_A paraphrohaemolyticus |
| Sequencing Technology |
Illumina NovaSeq 6000
|
| Genome Coverage |
6.638
|
| Contigs |
Number of Contigs: 230
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
1,802,816 (bp) |
| GC Percentage |
40.89
|
| MAG |
yes
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/378/345/GCA_018378345.1_ASM1837834v1
|
| CDS |
1679
|
| Genes |
1748
|
| mRNA |
1748
|
| misc RNA |
24
|
| rRNA |
3
|
| tRNA |
41
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
96.53 %
|
| CheckM Completeness |
92.69 %
|
| CheckM Contamination |
0.64 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM1837834v1
|
| GenBank Assembly Accession |
GCA_018378345.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_018378345.1
[NCBI]
|
| BioSample |
SAMN17801260
[NCBI]
|
| BioProject |
PRJNA698986
[NCBI]
|
| Submitter |
University of California, Berkeley
|
| Submission Date |
2021-02-04T18:19:24.670
|
| Assembly Method |
|
| Assembly Level |
Scaffold
|
| Sequencing Status |
|
| WGS
Project |
JAGZXP01
|
| NCBI TaxID |
736
|
| Isolation Source |
infant feces
|
| Geo Location |
USA: Pittsburgh, Magee-Womens
|
