Taxon Table | Genome Table
Genome Meta Information:
Veillonella
atypica
L2_013_122G1_dasL2_013_122G1_concoct_36 (GCA_018378995.1)
| HOMD Genome-ID |
GCA_018378995.1
|
| HOMD Taxon-ID |
HMT-0524
|
| Species Name (in use by HOMD) |
Veillonella atypica
|
| Organism Name (as deposited) |
HMT-524 Veillonella atypica L2_013_122G1_dasL2_013_122G1_concoct_36
|
| Strain or Isolate |
L2_013_122G1_dasL2_013_122G1_concoct_36
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;
s__Veillonella atypica |
| Sequencing Technology |
Illumina NovaSeq 6000
|
| Genome Coverage |
44.8903
|
| Contigs |
Number of Contigs: 136
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
1,840,430 (bp) |
| GC Percentage |
38.96
|
| MAG |
yes
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/378/995/GCA_018378995.1_ASM1837899v1
|
| CDS |
1705
|
| Genes |
1770
|
| mRNA |
1770
|
| misc RNA |
18
|
| rRNA |
1
|
| tRNA |
45
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
%
|
| CheckM Completeness |
94.33 %
|
| CheckM Contamination |
0.46 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM1837899v1
|
| GenBank Assembly Accession |
GCA_018378995.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_018378995.1
[NCBI]
|
| BioSample |
SAMN17801228
[NCBI]
|
| BioProject |
PRJNA698986
[NCBI]
|
| Submitter |
University of California, Berkeley
|
| Submission Date |
2021-02-04T18:19:24.070
|
| Assembly Method |
|
| Assembly Level |
Scaffold
|
| Sequencing Status |
|
| WGS
Project |
JAGZWJ01
|
| NCBI TaxID |
1926307
|
| Isolation Source |
infant feces
|
| Geo Location |
USA: Pittsburgh, Magee-Womens
|
