Genome Meta Information: Streptococcus parasanguinis L1_007_061G1_dasL1_007_061G1_concoct_11 (GCA_018379295.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018379295.1 | ||
| HOMD Taxon-ID | HMT-0411 | ||
| Species Name (in use by HOMD) | Streptococcus parasanguinis | ||
| Organism Name (as deposited) | HMT-411 Streptococcus parasanguinis L1_007_061G1_dasL1_007_061G1_concoct_11 | ||
| Strain or Isolate | L1_007_061G1_dasL1_007_061G1_concoct_11 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus sp001813105 |
||
| Sequencing Technology | Illumina NovaSeq 6000 | ||
| Genome Coverage | 9.812 | ||
| Contigs |
|
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| Total Sequence Length | 2,042,609 (bp) | ||
| GC Percentage | 41.94 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/379/295/GCA_018379295.1_ASM1837929v1 | ||
| CDS | 1924 | ||
| Genes | 1992 | ||
| mRNA | 1992 | ||
| misc RNA | 38 | ||
| rRNA | 1 | ||
| tRNA | 28 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.13 % | ||
| CheckM Completeness | 0 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1837929v1 |
| GenBank Assembly Accession | GCA_018379295.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN17801215 [NCBI] |
| BioProject | PRJNA698986 [NCBI] |
| Submitter | University of California, Berkeley |
| Submission Date | 2021-02-04T18:19:23.860 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAGZVW01 |
| NCBI TaxID | 1318 |
| Isolation Source | infant feces |
| Geo Location | USA: Pittsburgh, Magee-Womens |
