Genome Meta Information: Bifidobacterium scardovii L2_039_000G1_dasL2_039_000G1_concoct_54 (GCA_018380915.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018380915.1 | ||
| HOMD Taxon-ID | HMT-0891 | ||
| Species Name (in use by HOMD) | Bifidobacterium scardovii | ||
| Organism Name (as deposited) | HMT-891 Bifidobacterium scardovii L2_039_000G1_dasL2_039_000G1_concoct_54 | ||
| Strain or Isolate | L2_039_000G1_dasL2_039_000G1_concoct_54 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium; s__Bifidobacterium scardovii |
||
| Sequencing Technology | Illumina NovaSeq 6000 | ||
| Genome Coverage | 11.9775 | ||
| Contigs |
|
||
| Total Sequence Length | 3,001,014 (bp) | ||
| GC Percentage | 64.81 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/380/915/GCA_018380915.1_ASM1838091v1 | ||
| CDS | 2382 | ||
| Genes | 2451 | ||
| mRNA | 2451 | ||
| misc RNA | 14 | ||
| rRNA | 0 | ||
| tRNA | 54 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.23 % | ||
| CheckM Completeness | 95.21 % | ||
| CheckM Contamination | 2.41 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1838091v1 |
| GenBank Assembly Accession | GCA_018380915.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_018380915.1 [NCBI] |
| BioSample | SAMN17801138 [NCBI] |
| BioProject | PRJNA698986 [NCBI] |
| Submitter | University of California, Berkeley |
| Submission Date | 2021-02-04T18:19:22.403 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAGZSX01 |
| NCBI TaxID | 158787 |
| Isolation Source | infant feces |
| Geo Location | USA: Pittsburgh, Magee-Womens |
